Publications

Referred Journal Articles
(# indicates graduate student, * indicates undergraduate) 

  1. Johnson KC, JL Sabel, J Cole, CL Pruett, R Plymale, NS Reyna. From genetics to biotechnology: Synthetic biology as a flexible course-embedded research experience. Biochem Mol Bio Ed, In Press 2022.
  2. Castleman, G.Szwabowski, D.Bowman. J.Cole, A.L.Parrilla, D.L.Baker. Ligand-based G Protein Coupled Receptor pharmacophore modeling: Assessing the role of ligand function in model development. J Molecular Graphics Modelling 111, March 2022, 108107.
  3. MF Carrasco-Harris#, JA Cole, and Steve Reichling. Cozy in the City: The Morphology and Spatial Ecology of Copperheads in an Urban Forest. Urban Naturalist 35:1-19, 2020.
  4. MF Carrasco-Harris#, D Bowman, S Reichling, JA Cole. Spatial ecology of copperhead snakes (Agkistrodon contortrix) in response to urban park trails. J Urban Ecol 6, Issue 1, 2020, juaa007.
  5. MF Carrasco-Harris#, JR Mandel, CM Siniscalchi, S Reichling and JA Cole.    Population genetics of Copperheads (Agkistroden contortrix). Herpetol Rev 51:1-7, 2020.
  6. Szwabowski G#, Castleman PN#, Sears CK, Wink LH, Cole JA, Baker DL, Parrill AL Benchmarking GPCR homology model template selection in combination with de novo loop generation, J. Comp. Aided Mol. Design, 2020, 34, 1027-1044.
  7. EL Guy#, MW Martin#, AJ Kouba, JA Cole and CK Kouba. 2019.  Evaluation of different temporal periods between hormone-induced ovulation attempts in the female Fowler’s toad Anaxyrus fowleri.  Conservation Physiol. , Volume 8, Issue 1, 2020, coz113.
  8. Wink LH#, Baker DL, Cole JA, and Parrill, A. A Benchmark Study of Loop Modeling Methods Applied to G Protein-Coupled Receptors.  J Computer-Aided Molec Design, 2019 33(6):573-595.
  9. Castleman PN#, Sears CK*, Cole JA, Baker DL, Parrill AL. GPCR homology model template selection benchmarking: Global versus local similarity measures. J Molecular Graphics Modelling 86:235-246, 2019
  10. Campion CM#, Leon Carrion S#, Mamidanna G#, Sutter CH, Sutter TR, Cole JA. Role of EGF receptor ligands in TCDD-induced EGFR down-regulation and cellular proliferation. Chemico-Biological Interactions 253:38-47, 2016.
  11. McDonough CE*, CE, Martin MW#, Vance CK, Cole JA, Kouba AJ. Frequency of Exogenous Hormone Therapy Impacts Spermiation in Male Fowler’s Toads (Bufo fowleri) Reproduction.  Reproduction Fertility Develop 28:995-1003, 2015.
  12. Cooper JO#, Bumgardner JD, Cole JA, Smith RA, and Haggard WO (2014). Co-cultured tissue-specific scaffolds for tendon/bone interface engineering. J Tissue Eng 5:1-10.
  13. Fisher BS#, Estraño CE, Cole JA (2013) Modeling Long-Term Host Cell-Giardia lamblia Interactions in an In Vitro Co-Culture System. PLoS ONE 8(12): e81104, 2013.
  14. Poole NM#, Mamidanna G#, Smith RA, Coons LB, and Cole JA. Prostaglandin E2 in tick saliva regulates macrophage cell migration and cytokine profile.  Parasites & Vectors 2013, 6(1),1.
  15. Poole, NM#, Nyindodo-Ogari L#, Kramer C#, Coons LB and Cole JA. Effects of tick saliva on the migratory and invasive activity of Saos-2 osteosarcoma and MDA-MB-231 breast cancer cells.  Effects of tick saliva on the migratory and invasive activity of Saos-2.  Ticks Tick Borne-Dis 4:120-127, 2013.
  16. McCanless JD#, Jennings LK, Bumgardner JD, Cole JA, Haggard WO. Hematoma-inspired alginate/platelet releasate/CaPO(4) composite: initiation of the inflammatory-mediated response associated with fracture repair in vitro and ex vivo injection delivery. J Mater Sci Mater Med. 23(8):1971-81, 2012.
  17. McCanless JD#, Jennings LK, Cole JA, Bumgardner JD, Haggard WO. Induction of the early inflammatory-mediated cellular responses of fracture healing in vitro using platelet releasate-containing alginate/CaPO4 biomaterials for early osteoarthritis prevention. J Biomed Mater Res A. 100(5):1107-14, 2012.
  18. McCanless JD#, Jennings LK, Cole JA, Bumgardner JD, Haggard WO. In vitro differentiation and biocompatibility of mesenchymal stem cells on a novel platelet releasate-containing injectable composite. J Biomed Mater Res A. 100(1):220-229, 2012.
  19. Sabri F, Cole JA, Scarbrough MC* and Leventis N. Investigation of poylurea-crosslinked silica aerogels as a neuronal scaffold:  A pilot study.  PLoS ONE 7:e33232, 2012
  20. McCanless JD#, Cole JA, Slack SM, Bumgardner JD, Zamora PO, Haggard WO. Modeling nucleus pulposus regeneration in vitro: mesenchymal stem cells, alginate beads, hypoxia, BMP2, and synthetic peptide B2A.  Spine 36:2275-2285,
  21. CD Kramer#, NM Poole#, LB Coons, JA Cole. Tick Saliva Regulates Migration, Phagocytosis, and Gene Expression in the Macrophage-like Cell Line, IC-21.  Exp  Parasitol 127:665-671, 2011.
  22. Crews RM, Jennings JA, McCanless J, Cole JA, Bumgardner JD, Haggard WO. The characterization and optimization of injectable silicone resin particles in conjunction with dermal fibroblasts and growth factors: an in vitro study. J Biomed Mater Res B Appl Biomater. 93(1):227-35, 2010.
  23. Jennings JA, Crews RM, Robinson J, Richelsoph K, Cole JA, Bumgardner JD, Yang Y, Haggard WO. Effect of growth factors in combination with injectable silicon resin particles on the biological activity of dermal fibroblasts: A preliminary study.  J Biomed Mater Res B Appl Biomater. 92:255-60, 2010.
  24. Reves BT#, Bumgardner JD, Cole JA, Yang Y, Haggard WO. Lyophilization to improve drug delivery for chitosan-calcium phosphate bone scaffold construct: a preliminary investigation. J Biomed Mater Res B Appl Biomater. 90(1):1-10, 2009.
  25. Blaudow RA#, Coons LB, Cole JA. Cyclic nucleotide crosstalk in salivary glands from partially fed Dermacentor variabilis (Say). J Insect Physiol. 55(9):805-12, 2009.
  26. C Sutter, H Yin, Y Li, J Mammen, S Bodreddigari, G Stevens#, J Cole, T Sutter. EGF Receptor Signaling Blocks AH Receptor-mediated Transcription and Cell Differentiation in Human Epidermal Keratinocyte Proc. Nat’l Acad. Sci 106:4266-4271, 2009.
  27. Kramer, CD#, Z Nahmias*, DD Norman*, TA Mulvihill*, LB Coons and JA Cole. Dermacentor variabilis: Regulation of fibroblast migration by tick salivary gland extract and saliva. Exp Parasitol 119:391-397, 2008
  28. Khundmiri, SJ, A Ahmad, RE Bennett, EJ Weinman, D Steplock, J Cole, PD Baumann, J Lewis, SH Singh, B Clark and ED Lederer. Novel Regulatory Function for NHERF-1 (Na-H Exchanger Regulatory Factor) in Npt2a Transcription.  Am J Physiol Renal Physiol
    294: F84-F849, 2008
  29. Appleford, MR, S Oh, JA Cole, J Protivınsky, JL Ong Ultrasound effects on osteoblasts precursor cells in trabecular calcium phosphate scaffolds. Biomaterials 28:4788-4794, 2007.
  30. Appleford, M, S Oh, J Cole, JD Bumgarder, WO Haggard and J Ong. MAPK Signaling in 3-D hydroxyapatite scaffolds with low-Intensity ultrasound.  Biomaterials 28:2747–2753, 2007.
  31. SJ Khundmiri, EJ Weinman, D Steplock, J Cole, A Ahmad, PD Baumann, M Barati, MJ Rane, and E Lederer. Parathyroid hormone regulation of Na+,K+-ATPase requires the PDZ 1 domain of sodium hydrogen exchanger regulatory factor-1 in Opossum Kidney cells.   J Am Soc Nephrol 16: 2598 - 2607, 2005
  32. Blaudow, R J, JA Cole and LB Coons, 2005. Evidence that a cGMP second messenger pathway regulates fluid movement in isolated salivary glands of partially fed female Dermacentor variabilis. In: G. Weigmann, G. Alberti, A. Wohltmann & S.  Ragusa (eds), Acarine Biodiversity in the Natural and Human Sphere. Phytophaga (Palermo) 14 (2004): 129-140.
  33. Mahon, MJ, Cole, JA, Lederer, ED and Segre, GV. NHERF-1 mediates inhibition of phosphate transport by parathyroid hormone and second messengers by acting at multiple sites in opossum kidney cells. Endocrinol. 17:2355-2364, 2003.
  34. Cole JA. Parathyroid hormone activates mitogen-activated protein kinase in opossum kidney cells. Endocrinology 140: 5771-5779,1999.
  35. Cole, JA. Down-regulation of protein kinase C by parathyroid hormone and mezerein differentially modulates cAMP production and phosphate transport in opossum kidney cells. Bone Mineral Res. 12:1223-1230, 1997.
  36. Cole, JA, REW Walker and MR Yordy. Hyperglycemia-induced increases in Na+/myo-inositol transport, Na+/K+-ATPase and protein kinase C activity in proximal tubule cells.  Diabetes 44:446-452, 1995.
  37. Cole, JA, LR Forte, PK Thorne, RE Poelling and WJ Krause. Autotransplantation of avian parathyroid glands: An animal model for studying parathyroid function.  Comp. Endocrinol. 76:451-460, 1990.
  38. Thurston, AW, JA Cole, LS Hillman, JH Im, PK Thorne, WJ Krause, JR Jones, SL Eber and LR Forte. Purification and properties of parathyroid hormone-related peptide isolated from milk.  126:1183-1190, 1990.
  39. Miyauchi, A, V Dobre, M Rickmeyer, J Cole, L Forte and KA Hruska. Stimulation of transient elevations in cytosolic Ca2+ are related to inhibition of Pi transport in OK cells.  J. Physiol. 259:F485-F493, 1990.
  40. Cole, JA, LR Forte, WJ Krause and PK Thorne. Clonal sublines that are morphologically and functionally distinct from the parental OK cell line.  J. Physiol. 256:F672-F679, 1989.
  41. Cole, JA, DL Carnes, S Eber, PK Thorne and LR Forte. Structure-activity relationships of synthetic parathyroid hormone analogues in vitro.  Bone Mineral Res. 4 723-730, 1989.
  42. Cole, JA, LR Forte, S Eber, PK Thorne and RE Poelling. Regulation of sodium-dependent  phosphate transport in opossum kidney cells: Adenosine 3',5'-monophosphate-dependent and -independent mechanisms.  122:2981-2990, 1988.
  43. Cole, JA, SL Eber, RE Poelling, PK Thorne and LR Forte. A dual mechanism for the regulation of kidney phosphate transport by parathyroid hormone.  J. Physiol. 253:E221-E227, 1987.